PyOpenWorm.data_trans.wormatlas module¶
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class
PyOpenWorm.data_trans.wormatlas.
WormAtlasCellListDataSource
(*args, **kwargs)[source]¶ Bases:
PyOpenWorm.data_trans.csv_ds.CSVDataSource
- CSV file name :
DatatypeProperty
- Attribute: csv_file_name
- Header column names :
DatatypeProperty
- Attribute: csv_header
- CSV field delimiter :
DatatypeProperty
- Attribute: csv_field_delimiter
- File name :
DatatypeProperty
- Attribute: file_name
- Torrent file name :
DatatypeProperty
- Attribute: torrent_file_name
- MD5 hash :
DatatypeProperty
- Attribute: md5
- SHA-256 hash :
DatatypeProperty
- Attribute: sha256
- SHA-512 hash :
DatatypeProperty
- Attribute: sha512
- Input source :
ObjectProperty
Attribute: source
The data source that was translated into this one
- Translation :
ObjectProperty
Attribute: translation
Information about the translation process that created this object
- Description :
DatatypeProperty
Attribute: description
Free-text describing the data source
- CSV file name :
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class
PyOpenWorm.data_trans.wormatlas.
WormAtlasCellListDataTranslation
(**kwargs)[source]¶ Bases:
PyOpenWorm.datasource.GenericTranslation
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defined_augment
(self)[source]¶ This fuction must return False if
identifier_augment()
would raise anIdentifierMissingException
. Override it when defining a non-standard identifier for subclasses of DataObjects.
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identifier_augment
(self)[source]¶ Override this method to define an identifier in lieu of one explicity set.
One must also override
defined_augment()
to return True whenever this method could return a valid identifier.IdentifierMissingException
should be raised if an identifier cannot be generated by this method.Raises: - IdentifierMissingException
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class
PyOpenWorm.data_trans.wormatlas.
WormAtlasCellListDataTranslator
(**kwargs)[source]¶ Bases:
PyOpenWorm.data_trans.csv_ds.CSVDataTranslator
Input type(s):
PyOpenWorm.data_trans.wormatlas.WormAtlasCellListDataSource
,PyOpenWorm.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource
Output type(s):
PyOpenWorm.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource
URI: http://openworm.org/entities/translators/WormAtlasCellListDataTranslator
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output_type
¶ alias of
PyOpenWorm.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource
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translation_type
¶ alias of
WormAtlasCellListDataTranslation
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make_translation
(self, sources)[source]¶ It’s intended that implementations of DataTranslator will override this method to make custom Translations according with how different arguments to Translate are (or are not) distinguished.
The actual properties of a Translation subclass must be defined within the ‘translate’ method
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