PyOpenWorm.data_trans.wormbase module¶
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class
PyOpenWorm.data_trans.wormbase.
MuscleWormBaseCSVTranslator
(**kwargs)[source]¶ Bases:
PyOpenWorm.data_trans.csv_ds.CSVDataTranslator
Input type(s):
PyOpenWorm.data_trans.wormbase.WormBaseCSVDataSource
Output type(s):
PyOpenWorm.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource
URI: http://openworm.org/entities/translators/MuscleWormBaseCSVTranslator
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input_type
¶ alias of
WormBaseCSVDataSource
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output_type
¶ alias of
PyOpenWorm.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource
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class
PyOpenWorm.data_trans.wormbase.
NeuronWormBaseCSVTranslator
(**kwargs)[source]¶ Bases:
PyOpenWorm.data_trans.csv_ds.CSVDataTranslator
Input type(s):
PyOpenWorm.data_trans.wormbase.WormBaseCSVDataSource
Output type(s):
PyOpenWorm.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource
URI: http://openworm.org/entities/translators/NeuronWormBaseCSVTranslator
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input_type
¶ alias of
WormBaseCSVDataSource
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output_type
¶ alias of
PyOpenWorm.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource
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class
PyOpenWorm.data_trans.wormbase.
WormBaseCSVDataSource
(*args, **kwargs)[source]¶ Bases:
PyOpenWorm.data_trans.csv_ds.CSVDataSource
- CSV file name :
DatatypeProperty
- Attribute: csv_file_name
- Header column names :
DatatypeProperty
- Attribute: csv_header
- CSV field delimiter :
DatatypeProperty
- Attribute: csv_field_delimiter
- File name :
DatatypeProperty
- Attribute: file_name
- Torrent file name :
DatatypeProperty
- Attribute: torrent_file_name
- MD5 hash :
DatatypeProperty
- Attribute: md5
- SHA-256 hash :
DatatypeProperty
- Attribute: sha256
- SHA-512 hash :
DatatypeProperty
- Attribute: sha512
- Input source :
ObjectProperty
Attribute: source
The data source that was translated into this one
- Translation :
ObjectProperty
Attribute: translation
Information about the translation process that created this object
- Description :
DatatypeProperty
Attribute: description
Free-text describing the data source
- CSV file name :
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class
PyOpenWorm.data_trans.wormbase.
WormbaseIonChannelCSVDataSource
(*args, **kwargs)[source]¶ Bases:
PyOpenWorm.data_trans.csv_ds.CSVDataSource
- CSV file name :
DatatypeProperty
- Attribute: csv_file_name
- Header column names :
DatatypeProperty
- Attribute: csv_header
- CSV field delimiter :
DatatypeProperty
- Attribute: csv_field_delimiter
- File name :
DatatypeProperty
- Attribute: file_name
- Torrent file name :
DatatypeProperty
- Attribute: torrent_file_name
- MD5 hash :
DatatypeProperty
- Attribute: md5
- SHA-256 hash :
DatatypeProperty
- Attribute: sha256
- SHA-512 hash :
DatatypeProperty
- Attribute: sha512
- Input source :
ObjectProperty
Attribute: source
The data source that was translated into this one
- Translation :
ObjectProperty
Attribute: translation
Information about the translation process that created this object
- Description :
DatatypeProperty
Attribute: description
Free-text describing the data source
- CSV file name :
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class
PyOpenWorm.data_trans.wormbase.
WormbaseIonChannelCSVTranslator
(**kwargs)[source]¶ Bases:
PyOpenWorm.data_trans.csv_ds.CSVDataTranslator
Input type(s):
PyOpenWorm.data_trans.wormbase.WormbaseIonChannelCSVDataSource
Output type(s):
PyOpenWorm.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource
URI: http://openworm.org/entities/translators/WormbaseIonChannelCSVTranslator
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input_type
¶ alias of
WormbaseIonChannelCSVDataSource
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output_type
¶ alias of
PyOpenWorm.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource
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class
PyOpenWorm.data_trans.wormbase.
WormbaseTextMatchCSVDataSource
(*args, **kwargs)[source]¶ Bases:
PyOpenWorm.data_trans.csv_ds.CSVDataSource
- initial_cell_column :
DatatypeProperty
Attribute: initial_cell_column
The index of the first column with a cell name
- cell_type :
DatatypeProperty
Attribute: cell_type
The type of cell to be produced
- CSV file name :
DatatypeProperty
- Attribute: csv_file_name
- Header column names :
DatatypeProperty
- Attribute: csv_header
- CSV field delimiter :
DatatypeProperty
- Attribute: csv_field_delimiter
- File name :
DatatypeProperty
- Attribute: file_name
- Torrent file name :
DatatypeProperty
- Attribute: torrent_file_name
- MD5 hash :
DatatypeProperty
- Attribute: md5
- SHA-256 hash :
DatatypeProperty
- Attribute: sha256
- SHA-512 hash :
DatatypeProperty
- Attribute: sha512
- Input source :
ObjectProperty
Attribute: source
The data source that was translated into this one
- Translation :
ObjectProperty
Attribute: translation
Information about the translation process that created this object
- Description :
DatatypeProperty
Attribute: description
Free-text describing the data source
- initial_cell_column :
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class
PyOpenWorm.data_trans.wormbase.
WormbaseTextMatchCSVTranslator
(**kwargs)[source]¶ Bases:
PyOpenWorm.data_trans.csv_ds.CSVDataTranslator
Input type(s):
PyOpenWorm.data_trans.wormbase.WormbaseTextMatchCSVDataSource
Output type(s):
PyOpenWorm.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource
URI: http://openworm.org/entities/translators/WormbaseTextMatchCSVTranslator
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input_type
¶ alias of
WormbaseTextMatchCSVDataSource
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output_type
¶ alias of
PyOpenWorm.data_trans.data_with_evidence_ds.DataWithEvidenceDataSource
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